GWAS Summary Panel — gwas

A multi-panel dashboard combining Manhattan plot, QQ plot, top hits table, and summary statistics into a single publication-ready figure.

Usage

gwas_summary(
  data,
  chr = NULL,
  bp = NULL,
  p = NULL,
  snp = NULL,
  panels = c("manhattan", "qq", "top_hits", "density"),
  n_top = 5,
  genome_wide = 5e-08,
  suggestive = 1e-05,
  colors = NULL,
  palette = "colorblind",
  label_top_n = 3,
  title = NULL,
  theme_fn = NULL,
  layout = "auto"
)

Arguments

data: A gwas_data object or data.frame.
chr, bp, p, snp: Column name overrides.
panels: Character vector of panels to include. Options: "manhattan", "qq", "top_hits", "density", "stats".
n_top: Number of top hits to display in the table.
genome_wide: Genome-wide significance threshold.
suggestive: Suggestive significance threshold.
colors: Two-color vector for Manhattan chromosome colors.
palette: Palette name from gwas_palette().
label_top_n: Label top N SNPs on Manhattan.
title: Overall title.
theme_fn: Theme function to apply (default theme_gwas()).
layout: Layout arrangement: "auto", "wide", or "tall".

Value

A patchwork composition.

Examples

data(example_gwas)

# Full summary dashboard
gwas_summary(example_gwas)


# Manhattan and QQ only
gwas_summary(example_gwas, panels = c("manhattan", "qq"))