Read PLINK association results — read_plink_assoc • ggwas

Read PLINK association results

Usage

read_plink_assoc(file, ...)

Arguments

file: Path to a PLINK .assoc file.
...: Additional arguments passed to data.table::fread().

Value

A gwas_data object.

Examples

f <- system.file("extdata", "example_plink.assoc", package = "ggwas")
gwas <- read_plink_assoc(f)
#> Read 10 variants from example_plink.assoc
gwas
#> A gwas_data object: 10 variants across 6 chromosomes
#>   Min p-value: 6.80e-11
#>   Lambda GC:   0.692
#>   Columns:     CHR, BP, SNP, P, A1, A2, F_A, F_U, CHISQ, OR